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DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites

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Title: DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites
Authors: Jakalski, Marcin Browse this author
Wakaguri, Hiroyuki Browse this author
Kischka, Tabea G. Browse this author
Nishikawa, Yoshifumi Browse this author →KAKEN DB
Kawazu, Shin-ichiro Browse this author
Matsubayashi, Makoto Browse this author →KAKEN DB
Kawahara, Fumiya Browse this author
Tsuji, Naotoshi Browse this author →KAKEN DB
Cao, Shinuo Browse this author
Sunaga, Fujiko Browse this author
Xuan, Xuenan Browse this author →KAKEN DB
Okubo, Kazuhiro Browse this author
Igarashi, Ikuo Browse this author →KAKEN DB
Tuda, Josef Browse this author
Mongan, Arthur E. Browse this author
Eshita, Yuki Browse this author →KAKEN DB
Maeda, Ryuichiro Browse this author
Makalowski, Wojciech Browse this author
Suzuki, Yutaka Browse this author →KAKEN DB
Yamagishi, Junya Browse this author →KAKEN DB
Issue Date: 10-Nov-2014
Publisher: Oxford University Press
Journal Title: Nucleic Acids Research
Volume: 43
Issue: D1
Start Page: D631
End Page: D636
Publisher DOI: 10.1093/nar/gku1240
Abstract: The previous release of our Full-parasites database (http://fullmal.hgc.jp/) brought enhanced functionality, an expanded full-length cDNA content, and new RNA-Seq datasets from several important apicomplexan parasites. The 2015 update witnesses the major shift in the databases content with focus on diverse transcriptomes of the apicomplexan parasites. The content of the database was substantially enriched with transcriptome information for new apicomplexan parasites. The latest version covers a total of 17 species, with addition of our newly generated RNA-Seq data of a total of 909 150 388 tags. Moreover, we have generated and included two novel and unique datasets, which represent diverse nature of transcriptomes in individual parasites in vivo and in vitro. One is the data collected from 116 Indonesian patients infected with Plasmodium falciparum. The other is a series of transcriptome data collected from a total of 38 single cells of P. falciparum cultured in vitro. We believe that with the recent advances our database becomes an even better resource and a unique platform in the analysis of apicomplexan parasites and their interaction with their hosts. To adequately reflect the recent modifications and the current content we have changed the database name to DB-AT-DataBase of Apicomplexa Transcriptomes.
Description URI: http://nar.oxfordjournals.org/content/43/D1/D631
Rights: (C)The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.
http://creativecommons.org/licenses/by/4.0/
Type: article
URI: http://hdl.handle.net/2115/58557
Appears in Collections:人獣共通感染症リサーチセンター (Research Center for Zoonosis Control) > 雑誌発表論文等 (Peer-reviewed Journal Articles, etc)

Submitter: 山岸 潤也

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