| Title: | DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites |
| Authors: | Jakalski, Marcin Browse this author |
| Wakaguri, Hiroyuki Browse this author |
| Kischka, Tabea G. Browse this author |
| Nishikawa, Yoshifumi Browse this author →KAKEN DB |
| Kawazu, Shin-ichiro Browse this author |
| Matsubayashi, Makoto Browse this author →KAKEN DB |
| Kawahara, Fumiya Browse this author |
| Tsuji, Naotoshi Browse this author →KAKEN DB |
| Cao, Shinuo Browse this author |
| Sunaga, Fujiko Browse this author |
| Xuan, Xuenan Browse this author →KAKEN DB |
| Okubo, Kazuhiro Browse this author |
| Igarashi, Ikuo Browse this author →KAKEN DB |
| Tuda, Josef Browse this author |
| Mongan, Arthur E. Browse this author |
| Eshita, Yuki Browse this author →KAKEN DB |
| Maeda, Ryuichiro Browse this author |
| Makalowski, Wojciech Browse this author |
| Suzuki, Yutaka Browse this author →KAKEN DB |
| Yamagishi, Junya Browse this author →KAKEN DB |
| Issue Date: | 10-Nov-2014 |
| Publisher: | Oxford University Press |
| Journal Title: | Nucleic Acids Research |
| Volume: | 43 |
| Issue: | D1 |
| Start Page: | D631 |
| End Page: | D636 |
| Publisher DOI: | 10.1093/nar/gku1240 |
| Abstract: | The previous release of our Full-parasites database (http://fullmal.hgc.jp/) brought enhanced functionality, an expanded full-length cDNA content, and new RNA-Seq datasets from several important apicomplexan parasites. The 2015 update witnesses the major shift in the databases content with focus on diverse transcriptomes of the apicomplexan parasites. The content of the database was substantially enriched with transcriptome information for new apicomplexan parasites. The latest version covers a total of 17 species, with addition of our newly generated RNA-Seq data of a total of 909 150 388 tags. Moreover, we have generated and included two novel and unique datasets, which represent diverse nature of transcriptomes in individual parasites in vivo and in vitro. One is the data collected from 116 Indonesian patients infected with Plasmodium falciparum. The other is a series of transcriptome data collected from a total of 38 single cells of P. falciparum cultured in vitro. We believe that with the recent advances our database becomes an even better resource and a unique platform in the analysis of apicomplexan parasites and their interaction with their hosts. To adequately reflect the recent modifications and the current content we have changed the database name to DB-AT-DataBase of Apicomplexa Transcriptomes. |
| Description URI: | http://nar.oxfordjournals.org/content/43/D1/D631 |
| Rights: | (C)The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. |
| http://creativecommons.org/licenses/by/4.0/ |
| Type: | article |
| URI: | http://hdl.handle.net/2115/58557 |
| Appears in Collections: | 人獣共通感染症国際共同研究所 (International Institute for Zoonosis Control) > 雑誌発表論文等 (Peer-reviewed Journal Articles, etc)
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