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Hokkaido University Collection of Scholarly and Academic Papers >
Graduate School of Information Science and Technology / Faculty of Information Science and Technology >
Peer-reviewed Journal Articles, etc >
CIPRO 2.5 : Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality
Title: | CIPRO 2.5 : Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality |
Authors: | Endo, Toshinori Browse this author →KAKEN DB | Ueno, Keisuke Browse this author →KAKEN DB | Yonezawa, Kouki Browse this author | Mineta, Katsuhiko Browse this author →KAKEN DB | Hotta, Kohji Browse this author →KAKEN DB | Satou, Yutaka Browse this author →KAKEN DB | Yamada, Lixy Browse this author | Ogasawara, Michio Browse this author →KAKEN DB | Takahashi, Hiroki Browse this author →KAKEN DB | Nakajima, Ayako Browse this author | Nakachi, Mia Browse this author | Nomura, Mamoru Browse this author | Yaguchi, Junko Browse this author | Sasakura, Yasunori Browse this author →KAKEN DB | Yamasaki, Chisato Browse this author | Sera, Miho Browse this author | Yoshizawa, Akiyasu C. Browse this author | Imanishi, Tadashi Browse this author | Taniguchi, Hisaaki Browse this author →KAKEN DB | Inaba, Kazuo Browse this author →KAKEN DB |
Issue Date: | Jan-2011 |
Publisher: | Oxford University Press |
Journal Title: | Nucleic Acids Research |
Volume: | 39 |
Issue: | suppl. 1 |
Start Page: | D807 |
End Page: | D814 |
Publisher DOI: | 10.1093/nar/gkq1144 |
Abstract: | The Ciona intestinalis protein database (CIPRO) is an integrated protein database for the tunicate species C. intestinalis. The database is unique in two respects: first, because of its phylogenetic position, Ciona is suitable model for understanding vertebrate evolution; and second, the database includes original large-scale transcriptomic and proteomic data. Ciona intestinalis has also been a favorite of developmental biologists. Therefore, large amounts of data exist on its development and morphology, along with a recent genome sequence and gene expression data. The CIPRO database is aimed at collecting those published data as well as providing unique information from unpublished experimental data, such as 3D expression profiling, 2D-PAGE and mass spectrometry-based large-scale analyses at various developmental stages, curated annotation data and various bioinformatic data, to facilitate research in diverse areas, including developmental, comparative and evolutionary biology. For medical and evolutionary research, homologs in humans and major model organisms are intentionally included. The current database is based on a recently developed KH model containing 36 034 unique sequences, but for higher usability it covers 89 683 all known and predicted proteins from all gene models for this species. Of these sequences, more than 10 000 proteins have been manually annotated. Furthermore, to establish a community-supported protein database, these annotations are open to evaluation by users through the CIPRO website. CIPRO 2.5 is freely accessible at http://cipro.ibio.jp/2.5. |
Type: | article |
URI: | http://hdl.handle.net/2115/45023 |
Appears in Collections: | 情報科学院・情報科学研究院 (Graduate School of Information Science and Technology / Faculty of Information Science and Technology) > 雑誌発表論文等 (Peer-reviewed Journal Articles, etc)
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Submitter: 遠藤 俊徳
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