Title: | The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts |
Authors: | Yamasaki, Chisato Browse this author |
Murakami, Katsuhiko Browse this author |
Fujii, Yasuyuki Browse this author |
Sato, Yoshiharu Browse this author |
Harada, Erimi Browse this author |
Takeda, Jun-ichi Browse this author |
Taniya, Takayuki Browse this author |
Satake, Ryuichi Browse this author |
Kikugawa, Shingo Browse this author |
Shimada, Makoto Browse this author |
Tanino, Motohiko Browse this author |
Halligan, Brian Browse this author |
Shimoyama, Mary Browse this author |
Twigger, Simon Browse this author |
Yura, Kei Browse this author |
Kimura, Kouichi Browse this author |
Yasuda, Tomohiro Browse this author |
Nishikawa, Tetsuo Browse this author |
Akiyama, Yutaka Browse this author |
Motono, Chie Browse this author |
Mukai, Yuri Browse this author |
Shionyu, Masafumi Browse this author |
Nagasaki, Hideki Browse this author |
Suwa, Makiko Browse this author |
Horton, Paul Browse this author |
Kikuno, Reiko Browse this author |
Ohara, Osamu Browse this author |
Lancet, Doron Browse this author |
Eveno, Eric Browse this author |
Graudens, Esther Browse this author |
Imbeaud, Sandrine Browse this author |
Debily, Marie Anne Browse this author |
Jia, Libin Browse this author |
Hayashizaki, Yoshihide Browse this author |
Amid, Clara Browse this author |
Han, Michael Browse this author |
Osanger, Andreas Browse this author |
Endo, Toshinori Browse this author |
Thomas, Michael A. Browse this author |
Hirakawa, Mika Browse this author |
Makalowski, Wojciech Browse this author |
Nakao, Mitsuteru Browse this author |
Kim, Nam-Soon Browse this author |
Thierry-Mieg, Danielle Browse this author |
Yoo, Hyang-Sook Browse this author |
De Souza, Sandro J. Browse this author |
Bonaldo, Maria de Fatima Browse this author |
Niimura, Yoshihito Browse this author |
Kuryshev, Vladimir Browse this author |
Schupp, Ingo Browse this author |
Wiemann, Stefan Browse this author |
Bellgard, Matthew Browse this author |
Thierry-Mieg, Jean Browse this author |
Wagner, Lukas Browse this author |
Zhang, Qinghua Browse this author |
Go, Mitiko Browse this author |
Minoshima, Shinsei Browse this author |
Ohtsubo, Masafumi Browse this author |
Hanada, Kousuke Browse this author |
Koyanagi, Kanako O. Browse this author |
Tonellato, Peter Browse this author |
Isogai, Takao Browse this author |
Zhang, Ji Browse this author |
Lenhard, Boris Browse this author |
Kim, Sangsoo Browse this author |
Chen, Zhu Browse this author |
Hinz, Ursula Browse this author |
Estreicher, Anne Browse this author |
Nakai, Kenta Browse this author |
Makalowska, Izabela Browse this author |
Barrero, Roberto A. Browse this author |
Hide, Winston Browse this author |
Tiffin, Nicola Browse this author |
Wilming, Laurens Browse this author |
Chakraborty, Ranajit Browse this author |
Soares, Marcelo Bento Browse this author |
Chiusano, Maria Luisa Browse this author |
Suzuki, Yutaka Browse this author |
Auffray, Charles Browse this author |
Yamaguchi-Kabata, Yumi Browse this author |
Itoh, Takeshi Browse this author |
Gough, Craig Browse this author |
Hishiki, Teruyoshi Browse this author |
Fukuchi, Satoshi Browse this author |
Nishikawa, Ken Browse this author |
Sugano, Sumio Browse this author |
Nomura, Nobuo Browse this author |
Tateno, Yoshio Browse this author |
Imanishi, Tadashi Browse this author |
Gojobori, Takashi Browse this author |
Chun, Hong-Woo Browse this author |
Habara, Takuya Browse this author |
Hanaoka, Hideki Browse this author |
Hayakawa, Yosuke Browse this author |
Hilton, Philip B. Browse this author |
Kaneko, Yayoi Browse this author |
Kanno, Masako Browse this author |
Kawahara, Yoshihiro Browse this author |
Kawamura, Toshiyuki Browse this author |
Matsuya, Akihiro Browse this author |
Nagata, Naoki Browse this author |
Nishikata, Kensaku Browse this author |
Ogura Noda, Akiko Browse this author |
Nurimoto, Shin Browse this author |
Saichi, Naomi Browse this author |
Sakai, Hiroaki Browse this author |
Sanbonmatsu, Ryoko Browse this author |
Shiba, Rie Browse this author |
Suzuki, Mami Browse this author |
Takabayashi, Kazuhiko Browse this author |
Takahashi, Aiko Browse this author |
Tamura, Takuro Browse this author |
Tanaka, Masayuki Browse this author |
Tanaka, Susumu Browse this author |
Todokoro, Fusano Browse this author |
Yamaguchi, Kaori Browse this author |
Yamamoto, Naoyuki Browse this author |
Okido, Toshihisa Browse this author |
Mashima, Jun Browse this author |
Hashizume, Aki Browse this author |
Jin, Lihua Browse this author |
Lee, Kyung-Bum Browse this author |
Lin, Yi-Chueh Browse this author |
Nozaki, Asami Browse this author |
Sakai, Katsunaga Browse this author |
Tada, Masahito Browse this author |
Miyazaki, Satoru Browse this author |
Makino, Takashi Browse this author |
Ohyanagi, Hajime Browse this author |
Osato, Naoki Browse this author |
Tanaka, Nobuhiko Browse this author |
Suzuki, Yoshiyuki Browse this author |
Ikeo, Kazuho Browse this author |
Saitou, Naruya Browse this author |
Sugawara, Hideaki Browse this author |
O'Donovan, Claire Browse this author |
Kulikova, Tamara Browse this author |
Whitfield, Eleanor Browse this author |
Issue Date: | Jan-2008 |
Publisher: | Oxford University Press |
Journal Title: | Nucleic Acids Research |
Volume: | 36 |
Issue: | supple. 1 |
Start Page: | D793 |
End Page: | D799 |
Publisher DOI: | 10.1093/nar/gkm999 |
Abstract: | Here we report the new features and improvements in our latest release of the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/), a comprehensive annotation resource for human genes and transcripts. H-InvDB, originally developed as an integrated database of the human transcriptome based on extensive annotation of large sets of full-length cDNA (FLcDNA) clones, now provides annotation for 120 558 human mRNAs extracted from the International Nucleotide Sequence Databases (INSD), in addition to 54 978 human FLcDNAs, in the latest release H-InvDB_4.6. We mapped those human transcripts onto the human genome sequences (NCBI build 36.1) and determined 34 699 human gene clusters, which could define 34 057 (98.1%) protein-coding and 642 (1.9%) non-protein-coding loci; 858 (2.5%) transcribed loci overlapped with predicted pseudogenes. For all these transcripts and genes, we provide comprehensive annotation including gene structures, gene functions, alternative splicing variants, functional non-protein-coding RNAs, functional domains, predicted sub cellular localizations, metabolic pathways, predictions of protein 3D structure, mapping of SNPs and microsatellite repeat motifs, co-localization with orphan diseases, gene expression profiles, orthologous genes, protein–protein interactions (PPI) and annotation for gene families. The current H-InvDB annotation resources consist of two main views: Transcript view and Locus view and eight sub-databases: the DiseaseInfo Viewer, H-ANGEL, the Clustering Viewer, G-integra, the TOPO Viewer, Evola, the PPI view and the Gene family/group. |
Type: | article |
URI: | http://hdl.handle.net/2115/50064 |
Appears in Collections: | 情報科学院・情報科学研究院 (Graduate School of Information Science and Technology / Faculty of Information Science and Technology) > 雑誌発表論文等 (Peer-reviewed Journal Articles, etc)
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