HUSCAP logo Hokkaido Univ. logo

Hokkaido University Collection of Scholarly and Academic Papers >
Graduate School of Information Science and Technology / Faculty of Information Science and Technology >
Peer-reviewed Journal Articles, etc >

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Files in This Item:
4_D793.full.pdf2.73 MBPDFView/Open
Please use this identifier to cite or link to this item:http://hdl.handle.net/2115/50064

Title: The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts
Authors: Yamasaki, Chisato Browse this author
Murakami, Katsuhiko Browse this author
Fujii, Yasuyuki Browse this author
Sato, Yoshiharu Browse this author
Harada, Erimi Browse this author
Takeda, Jun-ichi Browse this author
Taniya, Takayuki Browse this author
Satake, Ryuichi Browse this author
Kikugawa, Shingo Browse this author
Shimada, Makoto Browse this author
Tanino, Motohiko Browse this author
Halligan, Brian Browse this author
Shimoyama, Mary Browse this author
Twigger, Simon Browse this author
Yura, Kei Browse this author
Kimura, Kouichi Browse this author
Yasuda, Tomohiro Browse this author
Nishikawa, Tetsuo Browse this author
Akiyama, Yutaka Browse this author
Motono, Chie Browse this author
Mukai, Yuri Browse this author
Shionyu, Masafumi Browse this author
Nagasaki, Hideki Browse this author
Suwa, Makiko Browse this author
Horton, Paul Browse this author
Kikuno, Reiko Browse this author
Ohara, Osamu Browse this author
Lancet, Doron Browse this author
Eveno, Eric Browse this author
Graudens, Esther Browse this author
Imbeaud, Sandrine Browse this author
Debily, Marie Anne Browse this author
Jia, Libin Browse this author
Hayashizaki, Yoshihide Browse this author
Amid, Clara Browse this author
Han, Michael Browse this author
Osanger, Andreas Browse this author
Endo, Toshinori Browse this author
Thomas, Michael A. Browse this author
Hirakawa, Mika Browse this author
Makalowski, Wojciech Browse this author
Nakao, Mitsuteru Browse this author
Kim, Nam-Soon Browse this author
Thierry-Mieg, Danielle Browse this author
Yoo, Hyang-Sook Browse this author
De Souza, Sandro J. Browse this author
Bonaldo, Maria de Fatima Browse this author
Niimura, Yoshihito Browse this author
Kuryshev, Vladimir Browse this author
Schupp, Ingo Browse this author
Wiemann, Stefan Browse this author
Bellgard, Matthew Browse this author
Thierry-Mieg, Jean Browse this author
Wagner, Lukas Browse this author
Zhang, Qinghua Browse this author
Go, Mitiko Browse this author
Minoshima, Shinsei Browse this author
Ohtsubo, Masafumi Browse this author
Hanada, Kousuke Browse this author
Koyanagi, Kanako O. Browse this author
Tonellato, Peter Browse this author
Isogai, Takao Browse this author
Zhang, Ji Browse this author
Lenhard, Boris Browse this author
Kim, Sangsoo Browse this author
Chen, Zhu Browse this author
Hinz, Ursula Browse this author
Estreicher, Anne Browse this author
Nakai, Kenta Browse this author
Makalowska, Izabela Browse this author
Barrero, Roberto A. Browse this author
Hide, Winston Browse this author
Tiffin, Nicola Browse this author
Wilming, Laurens Browse this author
Chakraborty, Ranajit Browse this author
Soares, Marcelo Bento Browse this author
Chiusano, Maria Luisa Browse this author
Suzuki, Yutaka Browse this author
Auffray, Charles Browse this author
Yamaguchi-Kabata, Yumi Browse this author
Itoh, Takeshi Browse this author
Gough, Craig Browse this author
Hishiki, Teruyoshi Browse this author
Fukuchi, Satoshi Browse this author
Nishikawa, Ken Browse this author
Sugano, Sumio Browse this author
Nomura, Nobuo Browse this author
Tateno, Yoshio Browse this author
Imanishi, Tadashi Browse this author
Gojobori, Takashi Browse this author
Chun, Hong-Woo Browse this author
Habara, Takuya Browse this author
Hanaoka, Hideki Browse this author
Hayakawa, Yosuke Browse this author
Hilton, Philip B. Browse this author
Kaneko, Yayoi Browse this author
Kanno, Masako Browse this author
Kawahara, Yoshihiro Browse this author
Kawamura, Toshiyuki Browse this author
Matsuya, Akihiro Browse this author
Nagata, Naoki Browse this author
Nishikata, Kensaku Browse this author
Ogura Noda, Akiko Browse this author
Nurimoto, Shin Browse this author
Saichi, Naomi Browse this author
Sakai, Hiroaki Browse this author
Sanbonmatsu, Ryoko Browse this author
Shiba, Rie Browse this author
Suzuki, Mami Browse this author
Takabayashi, Kazuhiko Browse this author
Takahashi, Aiko Browse this author
Tamura, Takuro Browse this author
Tanaka, Masayuki Browse this author
Tanaka, Susumu Browse this author
Todokoro, Fusano Browse this author
Yamaguchi, Kaori Browse this author
Yamamoto, Naoyuki Browse this author
Okido, Toshihisa Browse this author
Mashima, Jun Browse this author
Hashizume, Aki Browse this author
Jin, Lihua Browse this author
Lee, Kyung-Bum Browse this author
Lin, Yi-Chueh Browse this author
Nozaki, Asami Browse this author
Sakai, Katsunaga Browse this author
Tada, Masahito Browse this author
Miyazaki, Satoru Browse this author
Makino, Takashi Browse this author
Ohyanagi, Hajime Browse this author
Osato, Naoki Browse this author
Tanaka, Nobuhiko Browse this author
Suzuki, Yoshiyuki Browse this author
Ikeo, Kazuho Browse this author
Saitou, Naruya Browse this author
Sugawara, Hideaki Browse this author
O'Donovan, Claire Browse this author
Kulikova, Tamara Browse this author
Whitfield, Eleanor Browse this author
Issue Date: Jan-2008
Publisher: Oxford University Press
Journal Title: Nucleic Acids Research
Volume: 36
Issue: supple. 1
Start Page: D793
End Page: D799
Publisher DOI: 10.1093/nar/gkm999
Abstract: Here we report the new features and improvements in our latest release of the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/), a comprehensive annotation resource for human genes and transcripts. H-InvDB, originally developed as an integrated database of the human transcriptome based on extensive annotation of large sets of full-length cDNA (FLcDNA) clones, now provides annotation for 120 558 human mRNAs extracted from the International Nucleotide Sequence Databases (INSD), in addition to 54 978 human FLcDNAs, in the latest release H-InvDB_4.6. We mapped those human transcripts onto the human genome sequences (NCBI build 36.1) and determined 34 699 human gene clusters, which could define 34 057 (98.1%) protein-coding and 642 (1.9%) non-protein-coding loci; 858 (2.5%) transcribed loci overlapped with predicted pseudogenes. For all these transcripts and genes, we provide comprehensive annotation including gene structures, gene functions, alternative splicing variants, functional non-protein-coding RNAs, functional domains, predicted sub cellular localizations, metabolic pathways, predictions of protein 3D structure, mapping of SNPs and microsatellite repeat motifs, co-localization with orphan diseases, gene expression profiles, orthologous genes, protein–protein interactions (PPI) and annotation for gene families. The current H-InvDB annotation resources consist of two main views: Transcript view and Locus view and eight sub-databases: the DiseaseInfo Viewer, H-ANGEL, the Clustering Viewer, G-integra, the TOPO Viewer, Evola, the PPI view and the Gene family/group.
Type: article
URI: http://hdl.handle.net/2115/50064
Appears in Collections:情報科学院・情報科学研究院 (Graduate School of Information Science and Technology / Faculty of Information Science and Technology) > 雑誌発表論文等 (Peer-reviewed Journal Articles, etc)

Submitter: 遠藤 俊徳

Export metadata:

OAI-PMH ( junii2 , jpcoar )

MathJax is now OFF:


 

 - Hokkaido University